PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g070620.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 213aa    MW: 23748.9 Da    PI: 8.9772
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g070620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.1e-054466123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C + F+++  L  H++ H
  Csa09g070620.1 44 FECHYCFRNFPTSQALGGHQNAH 66
                    89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-64071No hitNo description
PfamPF139121.6E-54368IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.994471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MWVKRAREVL DCPVSKNKEE EEEEEDQTGD NDKDNSNIIN NRRFECHYCF RNFPTSQALG  60
GHQNAHKRER QLAKRGVSSY FHHPDTSLYS YRHYPSWTSS PLTAARSYGR YFYGPQSSAY  120
YTRPSYGSPL GLWRVPRASS SSGLQGIYNS NAAFTSSDIS SSSSNSTLSL LAGSQARPPL  180
QVGGPGSQTR ASSYRYGLSP NVHDHVSLDL HL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427709.11e-144PREDICTED: zinc finger protein GIS
SwissprotQ84WI04e-88GIS_ARATH; Zinc finger protein GIS
TrEMBLR0HNG81e-105R0HNG8_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.5__2251__AT3G58070.14e-90(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24951949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.18e-72C2H2 family protein